Sounds good, I will run it today in our VE to check if there was something missing, maybe some VM property. In Trackd.java you do get the matrices and they are changing when you move the glasses/wand?
For debugging you can do some print-out in HeadTrackedViewer.setHeadMatrix(...).
Btw, I have changed the Trackd shared mem keys to poperties read from the toolconfig(-portal).xml file... Also the head-sensor id can be configured there, but this is just for pausing the head-tracking...
Maybe I can help help via phone the next time you continue testing your setup, just email me (weissman at math.tu-berlin.de).
Eclipse seems to be not that easy to get for Itanium 64 ...
There is nothing magic that eclipse does, but it is usually easier for people that are not that familiar with compiling/running java, since the classpath etc. is set up correctly after check out.